Detailed information of SNP:
|
SNP ID:
sf0800144551(Gbrowse)
Chromosome: chr08 Position: 144551 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1344 | 70.09% | 29.91% |
| All Indica | 735 | 48.16% | 51.84% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 352 | 54.26% | 45.74% |
| Indica II | 197 | 31.98% | 68.02% |
| Indica Intermediate | 186 | 53.76% | 46.24% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 9 | 77.78% | 22.22% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800144551 | C->A | INTERGENIC | None |