Detailed information of SNP:
|
SNP ID:
sf0800147454(Gbrowse)
Chromosome: chr08 Position: 147454 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 81.55% | 18.45% |
| All Indica | 792 | 73.86% | 26.14% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 371 | 75.47% | 24.53% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 208 | 60.58% | 39.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 27.27% | 72.73% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800147454 | A->G | LOC_Os08g01210(LOC_Os08g01210.1) | SNPs that disrupt initiation codons |