Detailed information of SNP:
|
SNP ID:
sf0800159344(Gbrowse)
Chromosome: chr08 Position: 159344 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 65.30% | 34.70% |
| All Indica | 798 | 51.13% | 48.87% |
| All Japonica | 497 | 91.35% | 8.65% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 67.47% | 32.53% |
| Indica II | 213 | 34.74% | 65.26% |
| Indica Intermediate | 210 | 38.57% | 61.43% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800159344 | C->T | INTERGENIC | None |