Detailed information of SNP:
|
SNP ID:
sf0800159345(Gbrowse)
Chromosome: chr08 Position: 159345 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 60.37% | 39.63% |
| All Indica | 798 | 92.86% | 7.14% |
| All Japonica | 497 | 8.85% | 91.15% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800159345 | C->A | INTERGENIC | None |