Detailed information of SNP:
|
SNP ID:
sf0800181659(Gbrowse)
Chromosome: chr08 Position: 181659 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 67.37% | 32.63% |
| All Indica | 799 | 54.44% | 45.56% |
| All Japonica | 497 | 90.74% | 9.26% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 68.00% | 32.00% |
| Indica II | 213 | 34.74% | 65.26% |
| Indica Intermediate | 211 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800181659 | T->C | INTERGENIC | None |