Detailed information of SNP:
|
SNP ID:
sf0800184506(Gbrowse)
Chromosome: chr08 Position: 184506 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 72.55% | 27.45% |
| All Indica | 798 | 57.39% | 42.61% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 45.07% | 54.93% |
| Indica II | 213 | 70.42% | 29.58% |
| Indica Intermediate | 210 | 66.19% | 33.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800184506 | T->A | INTERGENIC | None |