Detailed information of SNP:
|
SNP ID:
sf0800189791(Gbrowse)
Chromosome: chr08 Position: 189791 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 86.75% | 13.25% |
| All Indica | 799 | 78.47% | 21.53% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 75.47% | 24.53% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800189791 | G->A | LOC_Os08g01290(LOC_Os08g01290.3) | UTR_3_PRIME |
| sf0800189791 | G->A | LOC_Os08g01290(LOC_Os08g01290.1) | UTR_3_PRIME |
| sf0800189791 | G->A | LOC_Os08g01290(LOC_Os08g01290.6) | UTR_3_PRIME |
| sf0800189791 | G->A | LOC_Os08g01290(LOC_Os08g01290.4) | UTR_3_PRIME |
| sf0800189791 | G->A | LOC_Os08g01290(LOC_Os08g01290.5) | UTR_3_PRIME |
| sf0800189791 | G->A | LOC_Os08g01290(LOC_Os08g01290.7) | UTR_3_PRIME |
| sf0800189791 | G->A | LOC_Os08g01290(LOC_Os08g01290.2) | UTR_3_PRIME |