Detailed information of SNP:
|
SNP ID:
sf0800201591(Gbrowse)
Chromosome: chr08 Position: 201591 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 81.04% | 18.96% |
| All Indica | 799 | 73.22% | 26.78% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 75.20% | 24.80% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800201591 | C->T | LOC_Os08g01320(LOC_Os08g01320.2) | Non-Synonymous SNP |
| sf0800201591 | C->T | LOC_Os08g01320(LOC_Os08g01320.1) | Non-Synonymous SNP |