Detailed information of SNP:
|
SNP ID:
sf0800206863(Gbrowse)
Chromosome: chr08 Position: 206863 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 92.14% | 7.86% |
| All Indica | 780 | 99.74% | 0.26% |
| All Japonica | 496 | 85.48% | 14.52% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 193 | 98.96% | 1.04% |
| Temperate Japonica | 335 | 80.00% | 20.00% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800206863 | T->C | INTERGENIC | None |