Detailed information of SNP:
|
SNP ID:
sf0800212386(Gbrowse)
Chromosome: chr08 Position: 212386 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 79.48% | 20.52% |
| All Indica | 798 | 72.93% | 27.07% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 74.67% | 25.33% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 210 | 57.62% | 42.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800212386 | A->G | INTERGENIC | None |