Detailed information of SNP:
|
SNP ID:
sf0800212505(Gbrowse)
Chromosome: chr08 Position: 212505 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 62.91% | 37.09% |
| All Indica | 798 | 49.62% | 50.38% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 374 | 66.84% | 33.16% |
| Indica II | 213 | 30.52% | 69.48% |
| Indica Intermediate | 211 | 38.39% | 61.61% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800212505 | A->G | INTERGENIC | None |