Detailed information of SNP:
|
SNP ID:
sf0800218246(Gbrowse)
Chromosome: chr08 Position: 218246 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 76.94% | 23.06% |
| All Indica | 798 | 73.43% | 26.57% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 74.93% | 25.07% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 210 | 59.05% | 40.95% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800218246 | G->A | INTERGENIC | None |