Detailed information of SNP:
|
SNP ID:
sf0800224034(Gbrowse)
Chromosome: chr08 Position: 224034 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 75.33% | 24.67% |
| All Indica | 799 | 57.57% | 42.43% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 44.53% | 55.47% |
| Indica II | 213 | 70.42% | 29.58% |
| Indica Intermediate | 211 | 67.77% | 32.23% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800224034 | T->A | LOC_Os08g01350(LOC_Os08g01350.1) | Non-Synonymous SNP |
| sf0800224034 | T->A | LOC_Os08g01350(LOC_Os08g01350.2) | Non-Synonymous SNP |