Detailed information of SNP:
|
SNP ID:
sf0800225466(Gbrowse)
Chromosome: chr08 Position: 225466 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 82.37% | 17.63% |
| All Indica | 798 | 75.81% | 24.19% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 74.93% | 25.07% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800225466 | G->A | INTERGENIC | None |