Detailed information of SNP:
|
SNP ID:
sf0800236681(Gbrowse)
Chromosome: chr08 Position: 236681 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 89.11% | 10.89% |
| All Indica | 777 | 82.24% | 17.76% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 82.42% | 17.58% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 202 | 70.30% | 29.70% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800236681 | G->A | INTERGENIC | None |