Detailed information of SNP:
|
SNP ID:
sf0800237518(Gbrowse)
Chromosome: chr08 Position: 237518 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 96.38% | 3.62% |
| All Indica | 797 | 98.49% | 1.51% |
| All Japonica | 491 | 97.35% | 2.65% |
| Aus | 66 | 68.18% | 31.82% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 332 | 98.19% | 1.81% |
| Tropical Japonica | 91 | 93.41% | 6.59% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800237518 | A->T | INTERGENIC | None |