Detailed information of SNP:
|
SNP ID:
sf0800237613(Gbrowse)
Chromosome: chr08 Position: 237613 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 64.34% | 35.66% |
| All Indica | 797 | 97.37% | 2.63% |
| All Japonica | 497 | 9.05% | 90.95% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800237613 | C->T | INTERGENIC | None |