Detailed information of SNP:
|
SNP ID:
sf0800237957(Gbrowse)
Chromosome: chr08 Position: 237957 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 96.58% | 3.42% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 494 | 93.72% | 6.28% |
| Aus | 54 | 96.30% | 3.70% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 92.51% | 7.49% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800237957 | A->C | INTERGENIC | None |