Detailed information of SNP:
|
SNP ID:
sf0800248554(Gbrowse)
Chromosome: chr08 Position: 248554 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 55.89% | 44.11% |
| All Indica | 799 | 76.35% | 23.65% |
| All Japonica | 497 | 18.11% | 81.89% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 75.73% | 24.27% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 14.03% | 85.97% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800248554 | C->T | INTERGENIC | None |