Detailed information of SNP:
|
SNP ID:
sf0800265718(Gbrowse)
Chromosome: chr08 Position: 265718 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 91.79% | 8.21% |
| All Indica | 770 | 85.71% | 14.29% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 360 | 79.17% | 20.83% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 200 | 86.00% | 14.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800265718 | C->T | INTERGENIC | None |