Detailed information of SNP:
|
SNP ID:
sf0800271674(Gbrowse)
Chromosome: chr08 Position: 271674 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 57.24% | 42.76% |
| All Indica | 796 | 28.02% | 71.98% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 373 | 24.66% | 75.34% |
| Indica II | 213 | 30.99% | 69.01% |
| Indica Intermediate | 210 | 30.95% | 69.05% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800271674 | T->A | INTERGENIC | None |