Detailed information of SNP:
|
SNP ID:
sf0800271949(Gbrowse)
Chromosome: chr08 Position: 271949 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.80% | 45.20% |
| All Indica | 799 | 80.98% | 19.02% |
| All Japonica | 497 | 9.05% | 90.95% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 78.67% | 21.33% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800271949 | C->T | LOC_Os08g01420(LOC_Os08g01420.1) | UTR_3_PRIME |