Detailed information of SNP:
|
SNP ID:
sf0800286831(Gbrowse)
Chromosome: chr08 Position: 286831 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 62.23% | 37.77% |
| All Indica | 799 | 45.06% | 54.94% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 57.60% | 42.40% |
| Indica II | 213 | 33.80% | 66.20% |
| Indica Intermediate | 211 | 34.12% | 65.88% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800286831 | G->T | INTERGENIC | None |