Detailed information of SNP:
|
SNP ID:
sf0800288042(Gbrowse)
Chromosome: chr08 Position: 288042 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 62.30% | 37.70% |
| All Indica | 799 | 45.18% | 54.82% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 57.60% | 42.40% |
| Indica II | 213 | 34.27% | 65.73% |
| Indica Intermediate | 211 | 34.12% | 65.88% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800288042 | C->T | LOC_Os08g01450(LOC_Os08g01450.1) | Non-Synonymous SNP |