Detailed information of SNP:
|
SNP ID:
sf0800290060(Gbrowse)
Chromosome: chr08 Position: 290060 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 75.95% | 24.05% |
| All Indica | 799 | 69.84% | 30.16% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 66 | 46.97% | 53.03% |
| Indica I | 375 | 67.47% | 32.53% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 56.40% | 43.60% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800290060 | G->A | INTERGENIC | None |