Detailed information of SNP:
|
SNP ID:
sf0800291156(Gbrowse)
Chromosome: chr08 Position: 291156 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 74.07% | 25.93% |
| All Indica | 799 | 68.84% | 31.16% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 68.00% | 32.00% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 56.40% | 43.60% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800291156 | G->T | INTERGENIC | None |