Detailed information of SNP:
|
SNP ID:
sf0800292632(Gbrowse)
Chromosome: chr08 Position: 292632 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 54.62% | 45.38% |
| All Indica | 797 | 27.35% | 72.65% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 32.27% | 67.73% |
| Indica II | 213 | 11.27% | 88.73% |
| Indica Intermediate | 209 | 34.93% | 65.07% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800292632 | T->C | LOC_Os08g01470(LOC_Os08g01470.1) | Synonymous |