Detailed information of SNP:
|
SNP ID:
sf0800299760(Gbrowse)
Chromosome: chr08 Position: 299760 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.62% | 42.38% |
| All Indica | 799 | 42.30% | 57.70% |
| All Japonica | 496 | 90.73% | 9.27% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 56.80% | 43.20% |
| Indica II | 213 | 27.70% | 72.30% |
| Indica Intermediate | 211 | 31.28% | 68.72% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800299760 | T->C | INTERGENIC | None |