Detailed information of SNP:
|
SNP ID:
sf0800301779(Gbrowse)
Chromosome: chr08 Position: 301779 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 76.84% | 23.16% |
| All Indica | 796 | 70.48% | 29.52% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 67.47% | 32.53% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 209 | 57.89% | 42.11% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800301779 | T->A | LOC_Os08g01490(LOC_Os08g01490.1) | INTRON |