Detailed information of SNP:
|
SNP ID:
sf0800323457(Gbrowse)
Chromosome: chr08 Position: 323457 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 82.13% | 17.87% |
| All Indica | 797 | 73.90% | 26.10% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 374 | 68.45% | 31.55% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 210 | 68.57% | 31.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800323457 | T->A | INTERGENIC | None |