Detailed information of SNP:
|
SNP ID:
sf0800332217(Gbrowse)
Chromosome: chr08 Position: 332217 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 65.84% | 34.16% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 497 | 9.46% | 90.54% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800332217 | T->C | INTERGENIC | None |