Detailed information of SNP:
|
SNP ID:
sf0800333326(Gbrowse)
Chromosome: chr08 Position: 333326 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1282 | 96.80% | 3.20% |
| All Indica | 701 | 94.86% | 5.14% |
| All Japonica | 468 | 99.36% | 0.64% |
| Aus | 59 | 98.31% | 1.69% |
| Indica I | 352 | 95.17% | 4.83% |
| Indica II | 168 | 93.45% | 6.55% |
| Indica Intermediate | 181 | 95.58% | 4.42% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 72 | 97.22% | 2.78% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800333326 | C->T | INTERGENIC | None |