Detailed information of SNP:
|
SNP ID:
sf0800337957(Gbrowse)
Chromosome: chr08 Position: 337957 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 68.78% | 31.22% |
| All Indica | 786 | 51.02% | 48.98% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 370 | 63.51% | 36.49% |
| Indica II | 209 | 35.89% | 64.11% |
| Indica Intermediate | 207 | 43.96% | 56.04% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800337957 | C->T | INTERGENIC | None |