Detailed information of SNP:
|
SNP ID:
sf0800340569(Gbrowse)
Chromosome: chr08 Position: 340569 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 57.78% | 42.22% |
| All Indica | 766 | 95.69% | 4.31% |
| All Japonica | 496 | 1.21% | 98.79% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 184 | 89.13% | 10.87% |
| Indica Intermediate | 207 | 95.17% | 4.83% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800340569 | A->T | INTERGENIC | None |