Detailed information of SNP:
|
SNP ID:
sf0800341787(Gbrowse)
Chromosome: chr08 Position: 341787 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 62.36% | 37.64% |
| All Indica | 797 | 96.11% | 3.89% |
| All Japonica | 496 | 9.27% | 90.73% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 36.56% | 63.44% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800341787 | A->G | LOC_Os08g01580(LOC_Os08g01580.1) | Synonymous |