Detailed information of SNP:
|
SNP ID:
sf0800343884(Gbrowse)
Chromosome: chr08 Position: 343884 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 60.83% | 39.17% |
| All Indica | 797 | 43.04% | 56.96% |
| All Japonica | 497 | 90.74% | 9.26% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 373 | 57.91% | 42.09% |
| Indica II | 213 | 32.39% | 67.61% |
| Indica Intermediate | 211 | 27.49% | 72.51% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800343884 | A->G | LOC_Os08g01580(LOC_Os08g01580.1) | Non-Synonymous SNP |