Detailed information of SNP:
|
SNP ID:
sf0800344996(Gbrowse)
Chromosome: chr08 Position: 344996 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 60.75% | 39.25% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 497 | 10.26% | 89.74% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800344996 | T->G | LOC_Os08g01580(LOC_Os08g01580.1) | Non-Synonymous SNP |