Detailed information of SNP:
|
SNP ID:
sf0800348379(Gbrowse)
Chromosome: chr08 Position: 348379 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 53.39% | 46.61% |
| All Indica | 798 | 34.71% | 65.29% |
| All Japonica | 497 | 90.74% | 9.26% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 374 | 55.61% | 44.39% |
| Indica II | 213 | 12.21% | 87.79% |
| Indica Intermediate | 211 | 20.38% | 79.62% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800348379 | C->G | INTERGENIC | None |