Detailed information of SNP:
|
SNP ID:
sf0800401121(Gbrowse)
Chromosome: chr08 Position: 401121 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1244 | 94.21% | 5.79% |
| All Indica | 627 | 88.68% | 11.32% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 239 | 79.92% | 20.08% |
| Indica II | 202 | 95.54% | 4.46% |
| Indica Intermediate | 186 | 92.47% | 7.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800401121 | T->A | INTERGENIC | None |