Detailed information of SNP:
|
SNP ID:
sf0800401228(Gbrowse)
Chromosome: chr08 Position: 401228 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1169 | 59.97% | 40.03% |
| All Indica | 555 | 98.38% | 1.62% |
| All Japonica | 495 | 9.49% | 90.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 184 | 99.46% | 0.54% |
| Indica II | 195 | 98.46% | 1.54% |
| Indica Intermediate | 176 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 92 | 38.04% | 61.96% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800401228 | C->T | INTERGENIC | None |