Detailed information of SNP:
|
SNP ID:
sf0800412021(Gbrowse)
Chromosome: chr08 Position: 412021 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 58.60% | 41.40% |
| All Indica | 798 | 36.47% | 63.53% |
| All Japonica | 497 | 90.74% | 9.26% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 52.53% | 47.47% |
| Indica II | 212 | 20.28% | 79.72% |
| Indica Intermediate | 211 | 24.17% | 75.83% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800412021 | C->A | INTERGENIC | None |