Detailed information of SNP:
|
SNP ID:
sf0800420304(Gbrowse)
Chromosome: chr08 Position: 420304 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 55.16% | 44.84% |
| All Indica | 794 | 92.95% | 7.05% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 373 | 94.37% | 5.63% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800420304 | G->A | INTERGENIC | None |