Detailed information of SNP:



SNP ID: sf0800426985(Gbrowse)

Chromosome: chr08

Position: 426985
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 60.55% 39.45%
All Indica797 93.60% 6.40%
All Japonica497 1.41% 98.59%
Aus67 100.00% 0.00%
Indica I374 93.58% 6.42%
Indica II213 97.65% 2.35%
Indica Intermediate210 89.52% 10.48%
Temperate Japonica335 0.90% 99.10%
Tropical Japonica94 4.26% 95.74%
Japonica Intermediate68 0.00% 100.00%
Group VI/Aromatic14 64.29% 35.71%
Intermediate42 69.05% 30.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0800426985 T->C INTERGENIC None