Detailed information of SNP:
SNP ID:
sf0800426985(Gbrowse)
Chromosome: chr08 Position: 426985 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1417 | 60.55% | 39.45% |
All Indica | 797 | 93.60% | 6.40% |
All Japonica | 497 | 1.41% | 98.59% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 374 | 93.58% | 6.42% |
Indica II | 213 | 97.65% | 2.35% |
Indica Intermediate | 210 | 89.52% | 10.48% |
Temperate Japonica | 335 | 0.90% | 99.10% |
Tropical Japonica | 94 | 4.26% | 95.74% |
Japonica Intermediate | 68 | 0.00% | 100.00% |
Group VI/Aromatic | 14 | 64.29% | 35.71% |
Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0800426985 | T->C | INTERGENIC | None |