Detailed information of SNP:
|
SNP ID:
sf0800429481(Gbrowse)
Chromosome: chr08 Position: 429481 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 51.09% | 48.91% |
| All Indica | 797 | 26.22% | 73.78% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 39.20% | 60.80% |
| Indica II | 213 | 7.04% | 92.96% |
| Indica Intermediate | 209 | 22.49% | 77.51% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800429481 | G->A | INTERGENIC | None |