Detailed information of SNP:
|
SNP ID:
sf0800432392(Gbrowse)
Chromosome: chr08 Position: 432392 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 83.96% | 16.04% |
| All Indica | 796 | 79.27% | 20.73% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 373 | 68.10% | 31.90% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800432392 | T->A | INTERGENIC | None |