Detailed information of SNP:
|
SNP ID:
sf0800439463(Gbrowse)
Chromosome: chr08 Position: 439463 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 80.06% | 19.94% |
| All Indica | 790 | 65.44% | 34.56% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 370 | 54.86% | 45.14% |
| Indica II | 211 | 86.73% | 13.27% |
| Indica Intermediate | 209 | 62.68% | 37.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800439463 | A->T | INTERGENIC | None |