Detailed information of SNP:
|
SNP ID:
sf0800451335(Gbrowse)
Chromosome: chr08 Position: 451335 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 55.78% | 44.22% |
| All Indica | 798 | 27.19% | 72.81% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 37.43% | 62.57% |
| Indica II | 213 | 11.27% | 88.73% |
| Indica Intermediate | 211 | 25.12% | 74.88% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800451335 | G->A | LOC_Os08g01750(LOC_Os08g01750.2) | INTRON |
| sf0800451335 | G->A | LOC_Os08g01750(LOC_Os08g01750.1) | INTRON |
| sf0800451335 | G->A | LOC_Os08g01750(LOC_Os08g01750.3) | INTRON |