Detailed information of SNP:
|
SNP ID:
sf0800451763(Gbrowse)
Chromosome: chr08 Position: 451763 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 59.45% | 40.55% |
| All Indica | 793 | 31.40% | 68.60% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 40.43% | 59.57% |
| Indica II | 211 | 18.96% | 81.04% |
| Indica Intermediate | 211 | 27.96% | 72.04% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800451763 | G->A | LOC_Os08g01750(LOC_Os08g01750.2) | INTRON |
| sf0800451763 | G->A | LOC_Os08g01750(LOC_Os08g01750.1) | INTRON |
| sf0800451763 | G->A | LOC_Os08g01750(LOC_Os08g01750.3) | INTRON |