Detailed information of SNP:
|
SNP ID:
sf0800452306(Gbrowse)
Chromosome: chr08 Position: 452306 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 81.66% | 18.34% |
| All Indica | 798 | 77.82% | 22.18% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 67.73% | 32.27% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800452306 | A->G | LOC_Os08g01750(LOC_Os08g01750.2) | INTRON |
| sf0800452306 | A->G | LOC_Os08g01750(LOC_Os08g01750.1) | INTRON |
| sf0800452306 | A->G | LOC_Os08g01750(LOC_Os08g01750.3) | INTRON |