Detailed information of SNP:
|
SNP ID:
sf0800481599(Gbrowse)
Chromosome: chr08 Position: 481599 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.71% | 44.29% |
| All Indica | 798 | 85.96% | 14.04% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 78.88% | 21.12% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800481599 | G->A | LOC_Os08g01794(LOC_Os08g01794.2) | UTR_3_PRIME |
| sf0800481599 | G->A | LOC_Os08g01794(LOC_Os08g01794.1) | UTR_3_PRIME |